| Title: | Genetic Algorithm Optimization |
|---|---|
| Description: | Genetic algorithm are a class of optimization algorithms inspired by the process of natural selection and genetics. This package is for learning purposes and allows users to optimize various functions or parameters by mimicking biological evolution processes such as selection, crossover, and mutation. Ideal for tasks like machine learning parameter tuning, mathematical function optimization, and solving an optimization problem that involves finding the best solution in a discrete space. |
| Authors: | Dany Mukesha [aut, cre] |
| Maintainer: | Dany Mukesha <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.3.2 |
| Built: | 2024-11-10 06:02:06 UTC |
| Source: | https://github.com/danymukesha/genetic.algo.optimizer |
This function performs crossover between the selected individuals that fit the best
based on the predefined condition(aim/objective).
e.g.: To optimize the function
to find the value of that minimizes the function.
: represents a possible value the an individual from the population can have.
crossover(selected_parents, offspring_size)crossover(selected_parents, offspring_size)
selected_parents |
The list of selected individuals from the population. |
offspring_size |
The number of offspring that the selected population should have. |
The output expected should be a list of offspring for the next generation.
Dany Mukesha
population <- c(1, 3, 0) # Evaluate fitness fitness <- evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents) # Crossover offspring <- crossover(selected_parents, offspring_size = 2) print("Crossover:") print(offspring)population <- c(1, 3, 0) # Evaluate fitness fitness <- evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents) # Crossover offspring <- crossover(selected_parents, offspring_size = 2) print("Crossover:") print(offspring)
The function described below applies this equation:
It assesses every individual of a given population,
to then provide an overview of how that population fits the equation.
evaluate_fitness(population)evaluate_fitness(population)
population |
The list of individuals of the population. |
The output expected should be a list of values
calculated from individuals in the population.
Dany Mukesha
# example of usage population <- c(1, 3, 0) # Evaluate fitness genetic.algo.optimizeR::evaluate_fitness(population)# example of usage population <- c(1, 3, 0) # Evaluate fitness genetic.algo.optimizeR::evaluate_fitness(population)
The function described below creates a population of individuals(values).
initialize_population(population_size, min = -100, max = 100)initialize_population(population_size, min = -100, max = 100)
population_size |
The number of individuals of the population. |
min |
The minimum number an individual could have. |
max |
The maximum number an individual could have. |
(Note: the values are random and the population should be highly diversified)
The space of x value is kept integer type and on range from 0 to 3, for simplification.
The output expected should be a list of individuals of the population with the size indicated in the input.
Dany Mukesha
# example of usage genetic.algo.optimizeR::initialize_population(population_size = 3, min = 0, max = 3)# example of usage genetic.algo.optimizeR::initialize_population(population_size = 3, min = 0, max = 3)
The function described below mutates offspring from the selected individuals that fit the best
based on the predefined condition(aim/objective).
e.g.: To optimize the function
to find the value of that minimizes the function.
: represents a possible value the an individual from the population can have.
mutation(offspring, mutation_rate)mutation(offspring, mutation_rate)
offspring |
The list of offspring. |
mutation_rate |
The probably of a single offspring to be modified/mutated. |
The mutation is needed to increase the diversity in the population and help the next generation close to the fitness.
The output expected should be a list of mutated offspring.
Dany Mukesha
# example of usage population <- c(1, 3, 0) # Evaluate fitness. fitness <- genetic.algo.optimizeR::evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- genetic.algo.optimizeR::selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents) # Crossover offspring <- genetic.algo.optimizeR::crossover(selected_parents, offspring_size = 2) print("Crossover:") print(offspring) # Mutation mutated_offspring <- genetic.algo.optimizeR::mutation(offspring, mutation_rate = 0) # (no mutation in this example) print(mutated_offspring)# example of usage population <- c(1, 3, 0) # Evaluate fitness. fitness <- genetic.algo.optimizeR::evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- genetic.algo.optimizeR::selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents) # Crossover offspring <- genetic.algo.optimizeR::crossover(selected_parents, offspring_size = 2) print("Crossover:") print(offspring) # Mutation mutated_offspring <- genetic.algo.optimizeR::mutation(offspring, mutation_rate = 0) # (no mutation in this example) print(mutated_offspring)
This function replace the individual(s) that was/were not selected (i.e. not the best fit)
based on the predefined condition(aim/objective).
e.g.: To optimize the function
to find the value of that minimizes the function.
: represents a possible value the an individual from the population can have.
replacement(population, offspring, num_to_replace)replacement(population, offspring, num_to_replace)
population |
The list of individuals of the population |
offspring |
The list of offspring. |
num_to_replace |
The number of selected individuals that should be replaced in the population. |
The output expected should be a list of selected individuals that fit the best with the predefined aim.
Dany Mukesha
# example of usage population <- c(1, 3, 0) # Evaluate fitness fitness <- genetic.algo.optimizeR::evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- genetic.algo.optimizeR::selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents) # Crossover and mutation offspring <- genetic.algo.optimizeR::crossover(selected_parents, offspring_size = 2) mutated_offspring <- mutation(offspring, mutation_rate = 0) # (no mutation in this example) print(mutated_offspring) # Replacement population <- genetic.algo.optimizeR::replacement(population, mutated_offspring, num_to_replace = 1) print("Replacement:") print(population)# example of usage population <- c(1, 3, 0) # Evaluate fitness fitness <- genetic.algo.optimizeR::evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- genetic.algo.optimizeR::selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents) # Crossover and mutation offspring <- genetic.algo.optimizeR::crossover(selected_parents, offspring_size = 2) mutated_offspring <- mutation(offspring, mutation_rate = 0) # (no mutation in this example) print(mutated_offspring) # Replacement population <- genetic.algo.optimizeR::replacement(population, mutated_offspring, num_to_replace = 1) print("Replacement:") print(population)
The function described below selects the individuals that fit the best
based on the predefined condition(aim/objective).
e.g.: To optimize the function
to find the value of that minimizes the function.
: represents a possible value the an individual from the population can have.
selection(population, fitness, num_parents)selection(population, fitness, num_parents)
population |
The list of individuals of the population |
fitness |
The list of individuals(value) obtained from the function
of |
num_parents |
The number of selected individuals that fit the best with the predefined aim. |
The output expected should be a list of selected individuals that fit the best with the predefined condition(aim/objective).
Dany Mukesha
# example of usage library(genetic.algo.optimizeR) population <- c(1, 3, 0) # Evaluate fitness fitness <- genetic.algo.optimizeR::evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- genetic.algo.optimizeR::selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents)# example of usage library(genetic.algo.optimizeR) population <- c(1, 3, 0) # Evaluate fitness fitness <- genetic.algo.optimizeR::evaluate_fitness(population) print("Evaluation:") print(fitness) # Selection selected_parents <- genetic.algo.optimizeR::selection(population, fitness, num_parents = 2) print("Selection:") print(selected_parents)